M
Mathias Brochhausen Institution-verified
Sourced from institutional research profiles (UAMS TRI or ARA).
Federal Grant PI
High Impact
Researcher
faculty
21 h-index
136 pubs
1,625 cited
Research Areas
Links
Biography and Research Information
OverviewAI-generated summary
Mathias Brochhausen investigates challenges in health data integration, focusing on semantic interoperability and knowledge representation. His work addresses the need for standardized data models to facilitate computational analysis and artificial intelligence applications in precision medicine (P5 Medicine). Brochhausen has published on the application of FAIR principles to metabolomics data processing software and developed checklists for reproducible computational analysis in clinical metabolomics research. He has also explored the linguistic and ontological challenges arising from multiple domains contributing to transformed health ecosystems and assessed the need for semantic data integration for surgical biobanks.
His research extends to understanding drug interactions through minimal information models. Brochhausen is a principal investigator on federal grants, including the TIPTOE (Trauma Institutional Priorities and Teams for Outcome Efficacy) grant funded by the NIH/National Institute of General Medical Sciences for $454,259. His scholarship metrics include an h-index of 20, 132 total publications, and 1,605 total citations. He collaborates with several researchers at the University of Arkansas for Medical Sciences, including Jonathan P. Bona, Joseph Utecht, Justin M. Whorton, and Cilia E. Zayas, with whom he shares multiple publications.
Metrics
- h-index: 21
- Publications: 136
- Citations: 1,625
Selected Publications
-
mcwdsi/OMRSE: v2026-04-07 (2026)
-
mcwdsi/OMRSE: v2026-04-07 (2026)
-
Enhancing Clinical Note Generation with ICD-10, Clinical Ontology Knowledge Graphs, and Chain-of-Thought Prompting Using GPT-4 (2026)
-
Generation of Interactive Knowledge Graphs to Enable Research of the Effects of Trauma Center Organization on Patient Outcomes (2025)
-
Nextflow4MS-DIAL: A Reproducible Nextflow-Based Workflow for Liquid Chromatography–Mass Spectrometry Metabolomics Data Processing (2025)
-
Expanding the Ontology of Organizational Structures of Trauma Centers and Trauma Systems. (2024)
-
The Representational Challenge of Integration and Interoperability in Transformed Health Ecosystems (2024)
-
The Representational Challenge for Designing and Managing 5P Medicine Ecosystems (2024)
-
An Automated Workflow Composition System for Liquid Chromatography–Mass Spectrometry Metabolomics Data Processing (2023)
-
Development and validation of the early warning system scores ontology (2023)
-
Designing and Managing Advanced, Intelligent and Ethical Health and Social Care Ecosystems (2023)
-
235 Use of Community Review Boards to Evaluate the Utility of the ICF Navigator - A Browser-based Tool to Create Plain-Language Informed Consent Forms (2023)
-
Linguistic and ontological challenges of multiple domains contributing to transformed health ecosystems (2023)
-
Evaluating LC-HRMS metabolomics data processing software using FAIR principles for research software (2023)
-
Guidelines for the reuse of ontology content (2023)
Federal Grants 1 $454,259 total
NIH/National Institute of General Medical Sciences
Contact PI
Mar 2015 - May 2027
Trauma Institutional Priorities and Teams for Outcome Efficacy (TIPTOE)
Collaboration Network
Top Collaborators
Bernd Blobel
University of Genoa (IT)
7 shared publications
- Autonomous Systems and Artificial Intelligence – Hype or Prerequisite for P5 Medicine?
- Linguistic and ontological challenges of multiple domains contributing to transformed health ecosystems
- Understanding the Gap Between Information Models and Realism-Based Ontologies Using the Generic Component Model
- Assessing the Need for Semantic Data Integration for Surgical Biobanks—A Knowledge Representation Perspective
- Designing and Managing Advanced, Intelligent and Ethical Health and Social Care Ecosystems
Showing 5 of 7 shared publications
William R. Hogan
Medical College of Wisconsin (US)
7 shared publications
- Evaluating LC-HRMS metabolomics data processing software using FAIR principles for research software
- A Checklist for Reproducible Computational Analysis in Clinical Metabolomics Research
- Nextflow4MS-DIAL: A Reproducible Nextflow-Based Workflow for Liquid Chromatography–Mass Spectrometry Metabolomics Data Processing
- An Automated Workflow Composition System for Liquid Chromatography–Mass Spectrometry Metabolomics Data Processing
- Integration of Biobanking Architecture with Genomics Data: Genomics Integrated Biobanking Ontology (GIBO)
Showing 5 of 7 shared publications
Pekka Ruotsalainen
Tampere University (FI)
4 shared publications
- Autonomous Systems and Artificial Intelligence – Hype or Prerequisite for P5 Medicine?
- Designing and Managing Advanced, Intelligent and Ethical Health and Social Care Ecosystems
- The Representational Challenge for Designing and Managing 5P Medicine Ecosystems
- The Representational Challenge of Integration and Interoperability in Transformed Health Ecosystems
Xinsong Du
Harvard University (US)
4 shared publications
- Evaluating LC-HRMS metabolomics data processing software using FAIR principles for research software
- A Checklist for Reproducible Computational Analysis in Clinical Metabolomics Research
- Nextflow4MS-DIAL: A Reproducible Nextflow-Based Workflow for Liquid Chromatography–Mass Spectrometry Metabolomics Data Processing
- An Automated Workflow Composition System for Liquid Chromatography–Mass Spectrometry Metabolomics Data Processing
Timothy J. Garrett
University of Florida (US)
4 shared publications
- Evaluating LC-HRMS metabolomics data processing software using FAIR principles for research software
- A Checklist for Reproducible Computational Analysis in Clinical Metabolomics Research
- Nextflow4MS-DIAL: A Reproducible Nextflow-Based Workflow for Liquid Chromatography–Mass Spectrometry Metabolomics Data Processing
- An Automated Workflow Composition System for Liquid Chromatography–Mass Spectrometry Metabolomics Data Processing
Dominick J. Lemas
University of Florida (US)
4 shared publications
- Evaluating LC-HRMS metabolomics data processing software using FAIR principles for research software
- A Checklist for Reproducible Computational Analysis in Clinical Metabolomics Research
- Nextflow4MS-DIAL: A Reproducible Nextflow-Based Workflow for Liquid Chromatography–Mass Spectrometry Metabolomics Data Processing
- An Automated Workflow Composition System for Liquid Chromatography–Mass Spectrometry Metabolomics Data Processing
Justin M. Whorton
University of Arkansas for Medical Sciences
4 shared publications
In database
- Assessing the Need for Semantic Data Integration for Surgical Biobanks—A Knowledge Representation Perspective
- 235 Use of Community Review Boards to Evaluate the Utility of the ICF Navigator - A Browser-based Tool to Create Plain-Language Informed Consent Forms
- Development and validation of the early warning system scores ontology
- Expanding the Ontology of Organizational Structures of Trauma Centers and Trauma Systems.
Cilia E. Zayas
University of Arkansas for Medical Sciences
4 shared publications
In database
- Linguistic and ontological challenges of multiple domains contributing to transformed health ecosystems
- Assessing the Need for Semantic Data Integration for Surgical Biobanks—A Knowledge Representation Perspective
- Experiences with developing and implementing a c<i>ourageous conversations</i> pilot classroom through synchronous meetings via zoom
- Development and validation of the early warning system scores ontology
Kevin W. Sexton
University of Arkansas for Medical Sciences
4 shared publications
In database
- Assessing the Need for Semantic Data Integration for Surgical Biobanks—A Knowledge Representation Perspective
- The Representational Challenge of Integration and Interoperability in Transformed Health Ecosystems
- Development and validation of the early warning system scores ontology
- Expanding the Ontology of Organizational Structures of Trauma Centers and Trauma Systems.
Jonathan P. Bona
University of Arkansas for Medical Sciences
4 shared publications
In database
- The informed consent form navigator: a tool for producing readable and compliant consent documents
- The PRISM semantic cohort builder: a novel tool to search and access clinical data in TCIA imaging collections
- 235 Use of Community Review Boards to Evaluate the Utility of the ICF Navigator - A Browser-based Tool to Create Plain-Language Informed Consent Forms
- Expanding the Ontology of Organizational Structures of Trauma Centers and Trauma Systems.
Sarah Bost
University of Florida Health (US)
3 shared publications
- Understanding the Gap Between Information Models and Realism-Based Ontologies Using the Generic Component Model
- Assessing the Need for Semantic Data Integration for Surgical Biobanks—A Knowledge Representation Perspective
- The PRISM semantic cohort builder: a novel tool to search and access clinical data in TCIA imaging collections
Nitya Singh
University of Florida (US)
3 shared publications
- Understanding the Gap Between Information Models and Realism-Based Ontologies Using the Generic Component Model
- Assessing the Need for Semantic Data Integration for Surgical Biobanks—A Knowledge Representation Perspective
- Integration of Biobanking Architecture with Genomics Data: Genomics Integrated Biobanking Ontology (GIBO)
Joseph Utecht
University of Arkansas Medical Center
3 shared publications
In database
- The informed consent form navigator: a tool for producing readable and compliant consent documents
- The PRISM semantic cohort builder: a novel tool to search and access clinical data in TCIA imaging collections
- 235 Use of Community Review Boards to Evaluate the Utility of the ICF Navigator - A Browser-based Tool to Create Plain-Language Informed Consent Forms
Matthew Diller
University of Florida (US)
3 shared publications
- Evaluating LC-HRMS metabolomics data processing software using FAIR principles for research software
- An Automated Workflow Composition System for Liquid Chromatography–Mass Spectrometry Metabolomics Data Processing
- Representation of the External Exposome in Ontologies: A Scoping Review (Preprint)
Richard D. Boyce
University of Pittsburgh (US)
2 shared publications
- A Minimal Information Model for Potential Drug-Drug Interactions
- Designing potential extensions from G-SRS to ChEBI to identify natural product-drug interactions
Similar Researchers
Based on overlapping research topics