Andy Pereira
Affiliation confirmed via AI analysis of OpenAlex, ORCID, and web sources.
Professor
Also affiliated: Pohang University of Science and Technology (2009); Commonwealth Scientific and Industrial Research Organisation (2009); Centre de Coopération Internationale en Recherche Agronomique pour le Développement (2009); Louisiana State University Agricultural Center (2022); Max Planck Society (1985–1989); University of Botswana (2017); International Rice Research Institute (2009–2010); Temasek Life Sciences Laboratory (2009); National University of Singapore (2009); Iowa State University (1985–1986); Huazhong Agricultural University (2009); University of Arkansas System (2019–2026); Institute of Plant and Microbial Biology, Academia Sinica (2009); New Mexico Consortium (2017); Agrico (Netherlands) (2005); Max Planck Institute for Plant Breeding Research (1985–1989); Plant Industry (2009); Centro de Investigación y de Estudios Avanzados del Instituto Politécnico Nacional (2010); University of California, Davis (2009); Academia Sinica (2009); Virginia Tech (2006–2017); Wageningen University & Research (1995–2022)
Research Areas
Biomedical Subjects
Links
Biography and Research Information
OverviewAI-generated summary
Andy Pereira's research program focuses on understanding plant responses to environmental stress, particularly drought. His work has investigated the genetic and molecular mechanisms underlying plant adaptation, with an emphasis on gene expression and the role of specific genes in conferring tolerance. Pereira has studied drought stress in various plant species, including Arabidopsis and rice, examining physiological and molecular changes that lead to acclimation and improved water use efficiency.
His publications include work on transcription factors involved in wax biosynthesis and cuticle properties, which are crucial for drought tolerance. He has also explored the use of genes from one species to enhance stress tolerance in another, such as expressing the HARDY gene from Arabidopsis in rice. Pereira's research extends to understanding drought effects on gene expression in maize and has touched upon plant transformation vector development. His laboratory has also investigated disease resistance, including work on an R gene from wild potato conferring resistance to *Phytophthora infestans*.
Pereira holds a high-impact researcher designation, evidenced by his h-index of 52 and over 12,800 citations across his 245 publications. He actively collaborates with researchers at the University of Arkansas at Fayetteville, including Julie A. Thomas, Yheni Dwiningsih, Charles Ruiz, and Awais Riaz, with whom he has co-authored multiple publications.
Metrics
- h-index: 52
- Publications: 245
- Citations: 12,819
Positions
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Professor 2011–presentUniversity of Arkansas Fayetteville Crop, Soil and Environmental Sciences ORCID
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Professor 2006–2010Virginia Polytechnic Institute and State University Virginia Bioinformatics Institute ORCID
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Senior Research Scientist 1989–2006Wageningen Universiteit en Researchcentrum Plant Research International BV Plant Research International ORCID
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Research Scientist 1986–1989Max Planck Institut fur Zuchtungsforschung Abteilung Saedler ORCID
Selected Publications
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High nighttime temperature (HNT)-responsive MicroRNA profiles in developing caryopses and flag leaves of 13 rice varieties (2026)
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Integrative Genomic Analyses to Unravel Genomic Regions and Candidate Genes Associated with Flag Leaf Photosynthesis at the Reproductive Stage in Rice (2025)
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Rice master regulator ‘HYR’ enhances growth and defense mechanisms with consequences for fall armyworm growth and host selection (2025)
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Effects of measurement methods and growing conditions on phenotypic expression of photosynthesis in seven diverse rice genotypes (2023)
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High Daytime Temperature Responsive MicroRNA Profiles in Developing Grains of Rice Varieties with Contrasting Chalkiness (2023)
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Molecular mapping and characterization of QTLs for grain quality traits in a RIL population of US rice under high nighttime temperature stress (2023)
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Molecular mapping and characterization of QTLs for grain quality traits in a RIL population of US rice under high nighttime temperature stress (2022)
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Identification of QTLs and Candidate Loci Associated with Drought-Related Traits of the K/Z RIL Rice Population (2022)
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QTL mapping of panicle architecture and yield-related traits between two US rice cultivars 'LaGrue' and 'Lemont' (2021)
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Identification of Genomic Regions Controlling Chalkiness and Grain Characteristics in a Recombinant Inbred Line Rice Population Based on High-Throughput SNP Markers (2021)
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Genetic Dissection of Grain Yield Component Traits Under High Nighttime Temperature Stress in a Rice Diversity Panel (2021)
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Quantitative Trait Loci and Candidate Gene Identification for Chlorophyll Content in RIL Rice Population under Drought Conditions (2021)
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Using Network-Based Machine Learning to Predict Transcription Factors Involved in Drought Resistance (2021)
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The Arabidopsis Proteins AtNHR2A and AtNHR2B Are Multi-Functional Proteins Integrating Plant Immunity With Other Biological Processes (2020)
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Genetic Mapping Identifies Consistent Quantitative Trait Loci for Yield Traits of Rice under Greenhouse Drought Conditions (2020)
Collaboration Network
Top Collaborators
- GBF3 transcription factor imparts drought tolerance in Arabidopsis thaliana
- Using Network-Based Machine Learning to Predict Transcription Factors Involved in Drought Resistance
- The FATTY ACID DESATURASE2 Family in Tomato Contributes to Primary Metabolism and Stress Responses
- RECoN: Rice Environment Coexpression Network for Systems Level Analysis of Abiotic-Stress Response
- Recent advances in gene function prediction using context-specific coexpression networks in plants
Showing 5 of 11 shared publications
- Plant adaptation to drought stress
- Coordinated regulation of photosynthesis in rice increases yield and tolerance to environmental stress
- Rice GROWTH UNDER DROUGHT KINASE Is Required for Drought Tolerance and Grain Yield under Normal and Drought Stress Conditions
- Cold tolerance response mechanisms revealed through comparative analysis of gene and protein expression in multiple rice genotypes
- Using Network-Based Machine Learning to Predict Transcription Factors Involved in Drought Resistance
Showing 5 of 10 shared publications
- Cold tolerance response mechanisms revealed through comparative analysis of gene and protein expression in multiple rice genotypes
- Identification of Genomic Regions Controlling Chalkiness and Grain Characteristics in a Recombinant Inbred Line Rice Population Based on High-Throughput SNP Markers
- Genetic Dissection of Grain Yield Component Traits Under High Nighttime Temperature Stress in a Rice Diversity Panel
- Physiological and transcriptional responses to low-temperature stress in rice genotypes at the reproductive stage
- Quantitative Trait Loci and Candidate Gene Identification for Chlorophyll Content in RIL Rice Population under Drought Conditions
Showing 5 of 10 shared publications
- Plant adaptation to drought stress
- Coordinated regulation of photosynthesis in rice increases yield and tolerance to environmental stress
- GBF3 transcription factor imparts drought tolerance in Arabidopsis thaliana
- Rice GROWTH UNDER DROUGHT KINASE Is Required for Drought Tolerance and Grain Yield under Normal and Drought Stress Conditions
- Cold tolerance response mechanisms revealed through comparative analysis of gene and protein expression in multiple rice genotypes
Showing 5 of 9 shared publications
- Effects of Drought on Gene Expression in Maize Reproductive and Leaf Meristem Tissue Revealed by RNA-Seq
- Coordinated regulation of photosynthesis in rice increases yield and tolerance to environmental stress
- Rice GROWTH UNDER DROUGHT KINASE Is Required for Drought Tolerance and Grain Yield under Normal and Drought Stress Conditions
- RECoN: Rice Environment Coexpression Network for Systems Level Analysis of Abiotic-Stress Response
- SANe: The Seed Active Network for Discovering Transcriptional Regulatory Programs of Seed Development
Showing 5 of 7 shared publications
- Coordinated regulation of photosynthesis in rice increases yield and tolerance to environmental stress
- Enhanced salt stress tolerance of rice plants expressing a vacuolar H+‐ATPase subunit c1 (SaVHAc1) gene from the halophyte grass Spartina alterniflora Löisel
- Phenotypic and Physiological Evaluation for Drought and Salinity Stress Responses in Rice
- Genetic Mapping Identifies Consistent Quantitative Trait Loci for Yield Traits of Rice under Greenhouse Drought Conditions
- Quantitative Trait Loci and Candidate Gene Identification for Chlorophyll Content in RIL Rice Population under Drought Conditions
Showing 5 of 6 shared publications
- Effects of Drought on Gene Expression in Maize Reproductive and Leaf Meristem Tissue Revealed by RNA-Seq
- Coordinated regulation of photosynthesis in rice increases yield and tolerance to environmental stress
- Phenotypic and Physiological Evaluation for Drought and Salinity Stress Responses in Rice
- RECoN: Rice Environment Coexpression Network for Systems Level Analysis of Abiotic-Stress Response
- Drought responsive genes and their functional terms identified by GS FLX Pyro sequencing in maize.
Showing 5 of 6 shared publications
- Identification of Genomic Regions Controlling Chalkiness and Grain Characteristics in a Recombinant Inbred Line Rice Population Based on High-Throughput SNP Markers
- Quantitative Trait Loci and Candidate Gene Identification for Chlorophyll Content in RIL Rice Population under Drought Conditions
- Molecular mapping and characterization of QTLs for grain quality traits in a RIL population of US rice under high nighttime temperature stress
- Identification of QTLs and Candidate Loci Associated with Drought-Related Traits of the K/Z RIL Rice Population
- Molecular mapping and characterization of QTLs for grain quality traits in a RIL population of US rice under high nighttime temperature stress
Showing 5 of 6 shared publications
- Effects of Drought on Gene Expression in Maize Reproductive and Leaf Meristem Tissue Revealed by RNA-Seq
- Coordinated regulation of photosynthesis in rice increases yield and tolerance to environmental stress
- Phenotypic and Physiological Evaluation for Drought and Salinity Stress Responses in Rice
- Drought responsive genes and their functional terms identified by GS FLX Pyro sequencing in maize.
- Plant adaptation to drought stress
- Quantitative Trait Loci and Candidate Gene Identification for Chlorophyll Content in RIL Rice Population under Drought Conditions
- Identification of QTLs and Candidate Loci Associated with Drought-Related Traits of the K/Z RIL Rice Population
- High Daytime Temperature Responsive MicroRNA Profiles in Developing Grains of Rice Varieties with Contrasting Chalkiness
- RNA sequencing analysis of salt tolerance in soybean (Glycine max)
- QTL Mapping of Charcoal Rot Resistance in PI 567562A Soybean Accession
- Quantitative Trait Loci for Chloride Tolerance in ‘Osage’ Soybean
- Effectiveness of a Seed Plate Assay for Evaluating Charcoal Rot Resistance in Soybean and the Relationship to Field Performance
- Identification of Genomic Regions Controlling Chalkiness and Grain Characteristics in a Recombinant Inbred Line Rice Population Based on High-Throughput SNP Markers
- Genetic Dissection of Grain Yield Component Traits Under High Nighttime Temperature Stress in a Rice Diversity Panel
- Molecular mapping and characterization of QTLs for grain quality traits in a RIL population of US rice under high nighttime temperature stress
- Molecular mapping and characterization of QTLs for grain quality traits in a RIL population of US rice under high nighttime temperature stress
- Identification of Genomic Regions Controlling Chalkiness and Grain Characteristics in a Recombinant Inbred Line Rice Population Based on High-Throughput SNP Markers
- Molecular mapping and characterization of QTLs for grain quality traits in a RIL population of US rice under high nighttime temperature stress
- Identification of QTLs and Candidate Loci Associated with Drought-Related Traits of the K/Z RIL Rice Population
- Molecular mapping and characterization of QTLs for grain quality traits in a RIL population of US rice under high nighttime temperature stress
- Meta-analysis of quantitative trait loci for grain yield and component traits under reproductive-stage drought stress in an upland rice population
- Crop Traits: Gene Isolation
- Crop Traits: Gene Isolation
- An ActiveAc/DsTransposon System for Activation Tagging in Tomato Cultivar M82 Using Clonal Propagation
- Transposon based activation tagging in diploid strawberry and monoploid derivatives of potato
- Anther culture induces transposable element movement in potato
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