D
Dylan S. Ogden Data-verified
Affiliation confirmed via AI analysis of OpenAlex, ORCID, and web sources.
Researcher
faculty
4 h-index
12 pubs
80 cited
Research Areas
Links
Biography and Research Information
OverviewAI-generated summary
Dylan S. Ogden's research focuses on the molecular dynamics and conformational changes of proteins, particularly the spike glycoproteins of coronaviruses. His work utilizes molecular dynamics simulations to investigate the thermodynamic and kinetic properties of these protein transitions. Ogden has published research characterizing the conformational dynamics of ABC exporter PCAT1 and GkPOT, as well as comparing the prefusion spike protein conformational changes in SARS-CoV-2 and SARS-CoV-1, noting that these changes are slower in SARS-CoV-2.
His scholarship includes 12 publications with 79 citations and an h-index of 4. Ogden has collaborated with several researchers at the University of Arkansas at Fayetteville, including Mahmoud Moradi (5 shared publications), Vivek Govind Kumar (3 shared publications), James Losey (2 shared publications), and Ugochi H. Isu (2 shared publications). His recent activity includes publications in 2022.
Metrics
- h-index: 4
- Publications: 12
- Citations: 80
Selected Publications
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Atomic-level characterization of the conformational transition pathways in SARS-CoV-1 and SARS-CoV-2 spike proteins (2022)
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Prefusion spike protein conformational changes are slower in SARS-CoV-2 than in SARS-CoV-1 (2022)
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A Companion Guide to the String Method with Swarms of Trajectories: Characterization, Performance, and Pitfalls (2022)
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Molecular Dynamics–Based Thermodynamic and Kinetic Characterization of Membrane Protein Conformational Transitions (2021)
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An Investigation of the Conformational Dynamics of ABC Exporter PCAT1 using Microsecond-Level MD Simulations (2021)
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Conformational Transition Pathway of GkPOT (2021)
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Differential Dynamic Behavior of Prefusion Spike Glycoproteins of Sars Coronaviruses 1 and 2 (2021)
Collaboration Network
Top Collaborators
Mahmoud Moradi
University of Arkansas at Fayetteville
7 shared publications
In database
- A Companion Guide to the String Method with Swarms of Trajectories: Characterization, Performance, and Pitfalls
- Prefusion spike protein conformational changes are slower in SARS-CoV-2 than in SARS-CoV-1
- Molecular Dynamics–Based Thermodynamic and Kinetic Characterization of Membrane Protein Conformational Transitions
- Differential Dynamic Behavior of Prefusion Spike Glycoproteins of Sars Coronaviruses 1 and 2
- Conformational Transition Pathway of GkPOT
Showing 5 of 7 shared publications
Vivek Govind Kumar
University of Arkansas at Fayetteville
3 shared publications
In database
- Prefusion spike protein conformational changes are slower in SARS-CoV-2 than in SARS-CoV-1
- Differential Dynamic Behavior of Prefusion Spike Glycoproteins of Sars Coronaviruses 1 and 2
- An Investigation of the Conformational Dynamics of ABC Exporter PCAT1 using Microsecond-Level MD Simulations
Ugochi H. Isu
University of Arkansas at Fayetteville
2 shared publications
In database
- Prefusion spike protein conformational changes are slower in SARS-CoV-2 than in SARS-CoV-1
- Differential Dynamic Behavior of Prefusion Spike Glycoproteins of Sars Coronaviruses 1 and 2
James Losey
University of Arkansas at Fayetteville
2 shared publications
In database
- Prefusion spike protein conformational changes are slower in SARS-CoV-2 than in SARS-CoV-1
- Differential Dynamic Behavior of Prefusion Spike Glycoproteins of Sars Coronaviruses 1 and 2
Kalyan Immadisetty
University of Arkansas at Fayetteville (US)
1 shared publication
- Conformational Transition Pathway of GkPOT
Curtis Goolsby
University of Arkansas at Fayetteville
1 shared publication
In database
- Conformational Transition Pathway of GkPOT
Haochuan Chen
Nankai University (CN)
1 shared publication
- A Companion Guide to the String Method with Swarms of Trajectories: Characterization, Performance, and Pitfalls
Shashank Pant
University of Illinois Urbana-Champaign (US)
1 shared publication
- A Companion Guide to the String Method with Swarms of Trajectories: Characterization, Performance, and Pitfalls
Wensheng Cai
Nankai University (CN)
1 shared publication
- A Companion Guide to the String Method with Swarms of Trajectories: Characterization, Performance, and Pitfalls
Emad Tajkhorshid
University of Illinois Urbana-Champaign (US)
1 shared publication
- A Companion Guide to the String Method with Swarms of Trajectories: Characterization, Performance, and Pitfalls
Benoı̂t Roux
University of Chicago (US)
1 shared publication
- A Companion Guide to the String Method with Swarms of Trajectories: Characterization, Performance, and Pitfalls
Christophe Chipot
University of Illinois Urbana-Champaign (US)
1 shared publication
- A Companion Guide to the String Method with Swarms of Trajectories: Characterization, Performance, and Pitfalls
Adithya Polasa
University of Arkansas at Fayetteville
1 shared publication
In database
- Prefusion spike protein conformational changes are slower in SARS-CoV-2 than in SARS-CoV-1
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